scDRP

• scDRP package
  • Submodules
  • scDRP.data module
    • CombinedDataset
      • CombinedDataset.__init__()
    • LabelDataset
      • LabelDataset.__init__()
    • LatentDataset
      • LatentDataset.__init__()
  • scDRP.loss module
    • HSICLoss
      • HSICLoss.__init__()
      • HSICLoss._compute_sigma()
      • HSICLoss._gaussian_kernel()
      • HSICLoss._median_heuristic()
      • HSICLoss._scotts_rule()
      • HSICLoss.forward()
    • NOCCOLoss
      • NOCCOLoss.__init__()
      • NOCCOLoss._center_gram()
      • NOCCOLoss._compute_normalized_cov()
      • NOCCOLoss._compute_sigma()
      • NOCCOLoss._gaussian_kernel()
      • NOCCOLoss._median_heuristic()
      • NOCCOLoss._scotts_rule()
      • NOCCOLoss.forward()
    • UnnormalizedHSCICLoss
      • UnnormalizedHSCICLoss.__init__()
      • UnnormalizedHSCICLoss._center_gram()
      • UnnormalizedHSCICLoss._compute_sigma()
      • UnnormalizedHSCICLoss._gaussian_kernel()
      • UnnormalizedHSCICLoss._median_heuristic()
      • UnnormalizedHSCICLoss._scotts_rule()
      • UnnormalizedHSCICLoss.forward()
    • ZINBLoss
      • ZINBLoss.__init__()
      • ZINBLoss.forward()
    • klLoss()
    • klLoss_prior()
  • scDRP.model module
    • Decoder
      • Decoder.__init__()
      • Decoder.forward()
    • Encoder
      • Encoder.__init__()
      • Encoder.forward()
      • Encoder.reparameterize()
    • HardConcreteGate
      • HardConcreteGate.__init__()
      • HardConcreteGate.forward()
      • HardConcreteGate.regularization_loss()
      • HardConcreteGate.sample_gate()
    • MSEDecoder
      • MSEDecoder.__init__()
      • MSEDecoder.forward()
    • NBDecoder
      • NBDecoder.__init__()
      • NBDecoder.forward()
    • PerturbNet
      • PerturbNet.__init__()
      • PerturbNet.forward()
      • PerturbNet.reparameterize()
      • PerturbNet.sample_sequencing_depth()
  • scDRP.module module
    • DosageModel
      • DosageModel.__init__()
      • DosageModel.predict()
    • Perturb
      • Perturb.__init__()
      • Perturb._fit_dose_to_dist()
      • Perturb._fit_gpr()
      • Perturb._fit_interpolator()
      • Perturb._generate_from_latent()
      • Perturb._generate_latent()
      • Perturb._representative_latent()
      • Perturb._sample_from_parameter()
      • Perturb.counterfactual_samples()
      • Perturb.create_dataset()
      • Perturb.dosage_extrapolate()
      • Perturb.effect_estimate()
      • Perturb.get_adata()
      • Perturb.get_counterfactual_adata()
      • Perturb.get_counterfactual_latent()
      • Perturb.get_latent()
      • Perturb.get_parameter_from_latent()
      • Perturb.inference()
      • Perturb.joint_effect_estimate()
      • Perturb.latent_adaption()
      • Perturb.load()
      • Perturb.sample_posterior()
      • Perturb.save()
      • Perturb.setup()
      • Perturb.train()
  • scDRP.train module
    • EarlyStopping
      • EarlyStopping.__init__()
      • EarlyStopping.save_checkpoint()
    • inference_model()
    • train_model()
    • validate_model()
  • scDRP.utils module
    • add_effect()
    • condition_quantile()
    • conditional_OT_latent()
    • to_dense_array()
  • Module contents